Georgia WWSCAN Biweekly Newsletter Update 10/11/24

Welcome to the bi-weekly update for WWSCAN partners in Georgia! The samples provided up through 10/7/24 have been processed in the lab and data are on the site at data.wastewaterscan.org.

If you notice any bugs on the site or have any comments about it, please continue to send your feedback via email wwscan_stanford_emory@lists.stanford.edu. We thank you for your partnership!

For site level summaries of the GA plants with current Wastewater Categories and concentration plots, see the following links:

• Big Creek, Roswell, GA
• College Park, GA
• Columbus, GA
• Johns Creek, Roswell, GA
• Little River, Roswell, GA
• RM Clayton, Atlanta, GA
• South River, Atlanta, GA
• Utoy Creek, Atlanta, GA

The methods for our assays are in the public domain and links for these are provided at the end of the newsletter.

SARS-CoV-2 RNA concentrations have been between 3,500 and 76,000 copies/gram in the last two weeks. The chart below shows the raw data over the last 365 days and the population-weighted aggregated trend line for all 8 Georgia sites when the data is normalized by PMMoV. The aggregated line and the National Levels benchmarks illustrate that SARS-CoV-2 N gene RNA concentrations among Georgia sites are between the middle and lower third level of all concentrations measured in the last year. In the Southern region, SARS-CoV-2 is now in the "Low" wastewater category with a downward trend over the last 21 days.

As of 10/11/24, South River, Big Creek, and Johns Creek are in the MEDIUM (3 sites) category. RM Clayton and Utoy Creek are in the LOW (2 sites) category. There was not enough data to calculate a category for College Park, Columbus, and Little River.

Sequencing of SARS-CoV-2 from wastewater is available for RM Clayton and College Park (Camp Creek). The plots below show the relative proportions of different variants inferred from sequencing the entire genome of SARS-CoV-2 (Note: the sequencing variant plots are now available on the website, so the plots that are shown below are linked above if you want to interact with them). Results are based on sequencing of 2 samples per week, combined to provide a weekly value.

In the most recent samples, KP.2 (41.7%) and KP.3 (41.7%) made up the largest proportions of lineages detected at RM Clayton. KP.2 (100.0%) made up the lineages detected at College Park. Note that the most recent data is shown below & should be updated as more samples are analyzed (through Aug 31 at RM Clayton and Sep 21 at College Park).

Sequencing data is now also available in aggregate across all sites in WWSCAN with sequencing data through Sep 28. That plot is shown below and suggests that KP.3 is the most abundant variant across all sites (55.7%) while JN.1.11 is the second most abundant variant (15.5%).

Influenza A (IAV) RNA was only detected at the College Park site in the last two weeks, according to the heat map below.

The chart below shows the raw data and the population-weighted aggregated trend line for all 8 Georgia sites when the data is normalized by PMMoV is at the bottom of the middle third level. As of 10/11/24, RM Clayton, South River, Utoy Creek, Big Creek, and Johns Creek are in the LOW (5 sites) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River.

H5 marker in Influenza A (IAV) Below is a heat map showing the Georgia sites with samples collected in the last 6 weeks. All results thus far have been non-detect at all Georgia WWSCAN sites based on available data. For more information about this testing and interpretation of results, see our FAQ sheet here.

Influenza B (IBV) RNA has not been detected at any of the Georgia WWSCAN sites in the last month, according to the heat map below. As of 10/11/24, RM Clayton, South River, Utoy Creek, Big Creek, and Johns Creek are in the LOW (5 sites) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River.

Respiratory syncytial virus (RSV) RNA was detected at the Big Creek, College Park, Columbus, and Utoy Creek sites over the last two weeks, according to the heat map below. RSV RNA concentrations are below 9,000 copies/g. As of 10/11/24, RM Clayton, South River, Utoy Creek, Big Creek, and Johns Creek are in the LOW (5 sites) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River. Nationally and in the Southern region, RSV is in the "Low" wastewater category and not in seasonal onset.

HMPV (human metapneumovirus) RNA was only detected at the Big Creek site in the last six weeks, based on the heat map below. As of 10/11/24, RM Clayton, South River, Utoy Creek, Big Creek, and Johns Creek are in the LOW (5 sites) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River.

EV-D68 RNA has been frequently detected at Georgia WWSCAN sites and concentrations are below 38,000 copies/g over the last two weeks, according to the heat map below. As a reminder, the color blue means the sample was non-detect for EV-D68 RNA and the colors get darker orange with higher concentrations. 

As of 10/11/24, RM Clayton, South River, Utoy Creek, and Big Creek are in the MEDIUM (4 sites) wastewater category, while Johns Creek is in the LOW (1 site) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River. In the South, EV-D68 is in the “Medium” wastewater category and ~ 77% of the samples tested in the last 10 days detected EV-D68.

The chart below shows the raw data and the population-weighted aggregated trend line for all 8 Georgia sites when the data is normalized by PMMoV.

Norovirus GII (HuNoV GII) RNA concentrations range between 950,000 - 7,700,000 copies/g, and the population-weighted average line when the data is normalized by PMMoV for the 8 Georgia sites is within the middle third level. HuNoV GII RNA chart below also shows the raw data. As of 10/11/24, South River, Big Creek, and Johns Creek are in the MEDIUM (3 sites) wastewater category. RM Clayton and Utoy Creek are in the LOW (2 sites) category. There was not enough data to calculate a category for College Park. There was not enough data to calculate a category for College Park, Columbus, and Little River.

Rotavirus RNA concentrations have been below 64,000 copies/g over the last two weeks. The chart below shows the population-weighted average line is shown in black plus the raw data over the last 365 days for each site. As of 10/11/24, RM Clayton and South River are in the MEDIUM (2 sites) wastewater category. Utoy Creek, Big Creek, and Johns Creek are in the LOW (3 sites) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River.

Mpox clade II DNA was detected at the Utoy Creek site in the last two weeks on October 1st. This heat map shows data since July 2022. Sites are labeled in the rows and each date a sample was collected as a column. The color blue means the sample was non-detect for mpox DNA and the color maroon means Mpox DNA was detected. White indicates no sample was collected. As of 10/11/24, RM Clayton, South River, Utoy Creek, Big Creek, and Johns Creek are in the LOW (5 sites) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River.

Candida auris DNA was not detected at any of the Georgia WWSCAN sites over the last two weeks, based on the heat map below. As of 10/11/24, RM Clayton, South River, Utoy Creek, Big Creek, and Johns Creek are in the LOW (5 sites) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River.

Hepatitis A RNA was detected at RM Clayton and South River over the last two weeks, according to the heat map. South River is in the MEDIUM (1 site) wastewater category, as of 10/11/24. RM Clayton, Utoy Creek, Big Creek, and Johns Creek are in the LOW (4 sites) wastewater category. There was not enough data to calculate a category for College Park, Columbus, and Little River.

Protocols (Pre-analytical methods and SARS-CoV-2 analytical methods including controls):

• High Throughput RNA Extraction and PCR Inhibitor Removal of Settled Solids for Wastewater Surveillance of SARS-CoV-2 RNA
• High Throughput pre-analytical processing of wastewater settled solids for SARS-CoV-2 RNA analyses
• Quantification of SARS-CoV-2 variant mutations (HV69-70, E484K/N501Y, del156-157/R158G, del143-145, LPPA24S, S:477-505, and ORF1a Del 141-143) in settled solids using digital RT-PCR
• High Throughput SARS-COV-2, PMMoV, and BCoV quantification in settled solids using digital RT-PCR

Pre-prints and peer-reviewed publications provided WWSCAN methods: 

• SARS-CoV-2 
• Influenza, Human metapneumovirus, Respiratory syncytial virus, Human parainfluenza
• Mpox
• Norovirus GII
• Adenovirus group F, Rotavirus, Candida auris, Hepatitis A
• Enterovirus D68

Newly published papers are available here:

• Detection of Hemagglutinin H5 Influenza A Virus Sequence in Municipal Wastewater Solids at Wastewater Treatment Plants with Increases in Influenza A in Spring, 2024
• Prospective study of Candida auris nucleic acids in wastewater solids in 190 wastewater treatment plants in the United States suggests widespread occurrence

Recently accepted papers to be published soon:

• Detection of Hepatovirus A (HAV) in wastewater indicates widespread national distribution and association with socioeconomic indicators of vulnerability
• Detection and quantification of human immunodeficiency virus-1 (HIV-1) total nucleic acids in wastewater settled solids from two California communities
• Human pathogen nucleic acids in wastewater solids from 191 wastewater treatment plants in the United States. Accepted at Scientific Data.

Public Health Factsheets:

• Influenza A Fact Sheet: Provides a summary of a November 2023 paper exploring how to analyze wastewater data to extract relevant public health insights on Influenza A. Click here to access the IAV fact sheet.
• RSV Fact Sheet: Provides a summary of a March 2024 paper exploring how to analyze wastewater data to extract relevant public health insights on RSV. Click here to access the RSV fact sheet.

WastewaterSCAN Published Body of Work document:

• We are excited to share a new document that provides an overview of the program’s peer-reviewed scientific literature, organized by topics and themes. Click here to access the WastewaterSCAN published body of work.

Next week at IDWeek in Los Angeles! WastewaterSCAN program director Dr. Marlene Wolfe and team member Dr. Alessandro Zulli will be giving presentations.

The next WastewaterSCAN stakeholder meeting will take place at 12pm ET on November 8, 2024. You can use this zoom link to join. Hope to see you there!