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Nationwide WastewaterSCAN July 2025 Update

Hi everyone,

This newsletter contains updates on the WastewaterSCAN program with wastewater samples analyzed by the lab through July 30, 2025. Below you will find information on the program in terms of participating partners, review of targets being measured, as well as current wastewater categories (low, medium, high) of the infectious disease targets.

Best,

WastewaterSCAN Team

Participating Plants

147 WWTPs plants across 40 states

WWSCAN Participant Stats:

  • 147 plants sampling
  • >37 million people covered through sampling efforts
  • 40 states
WWSCAN site coverage map as of July 2025

Infectious Disease Target Review

Currently monitoring a suite of Respiratory, Gastrointestinal and Outbreak Pathogens of Concern

The methods for our assays are in the public domain and links for these are provided at the end of the newsletter. As a reminder, in mid-May 2025 WWSCAN resumed measurements of Rotavirus and Adenovirus group F, and added Measles and Parvovirus to the list of pathogens monitored.

Program Publications

Recent publications, factsheets, FAQs, and more!

WWSCAN Published Body of Work document:

WWSCAN FAQs:

WWSCAN Factsheets and Guidance Documents can be found here.

Wastewater Category Logic

As a reminder, WWSCAN's categorize sites based on Levels + Trends + Frequency of detection. We adopted this methodology back in 2023 as a way to clearly communicate what wastewater is telling us about community disease circulation. The wastewater categorization helps us quickly understand if the recent measurements for a disease fall into a low, medium, or high category and are determined based on a combination of the following variables:

  • Trends tell us how concentrations are changing  (↑, ↓, -) over the last 21 days
  • Levels tell us whether concentrations are relatively lower or higher (based on national tertiles over last 365 days)
  • Frequency of detection indicates how often a pathogen is detected in wastewater (important for pathogens that are not commonly detected)

There are 3 Archetypes for WWSCAN Pathogens:

  • Pathogens that are commonly detected (regardless of season - includes SARS-CoV-2, Norovirus)
  • Seasonal pathogens (rarely detected outside of season/outbreaks - includes Influenza A + B, RSV, HMPV, EV-D68)
  • Pathogens that are not commonly detected (regardless of season - includes C. auris, HepA, Measles, Mpox clade Ib, Mpox clade II)

*Categories are not being calculated for H1/H3/H5 Influenza markers, Parvovirus, Rotavirus or Adenovirus Group F.

To learn more about WWSCAN's categorization logic, please see: https://data.wastewaterscan.org/about/#8

COVID-19

SARS-CoV-2 concentration in wastewater and sequencing for variants

SARS-CoV-2 N gene RNA median concentration across all sites in past 3 weeks was 36,016 copies/gram. SARS-CoV-2 was detected in 96% of samples in July. Although we haven’t seen a large surge so far this summer, the median SARS-CoV-2 concentration in July 2025 was up 46% compared to June 2025. We will continue to monitor closely.

Below is the population weighted average SARS-CoV-2 N gene concentrations (normalized by PMMoV) is shown in black from all participating WWSCAN sites across the country over the last 365 days.

Midwest states: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast states: CT, MA, ME, NH, NJ, NY, PA, VT. Southern states: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western States: AK, CA, CO, HI, ID, NV, UT, WA.

Nationally, SARS-CoV-2 is in the 'MEDIUM' category with aggregated measurements showing medium concentrations and a no trend over the last 3 weeks.

Below are the current SARS-CoV-2 wastewater categories for all WWSCAN sites (recall the category is determined by both the trend and the level):

  • 45 are in the LOW Wastewater Category
  • 45 are in the MEDIUM Wastewater Category
  • 51 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

SARS-CoV-2 Wastewater Categories. This map includes sample collection data through July 30, 2025. Each dot represents a single site and the four US Census regions are outlined in gray. Midwest Region includes: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast Region includes: CT, MA, ME, NH, NJ, NY, PA, VT. Southern Region includes: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western Region includes: AK, CA, CO, HI, ID, NV, UT, WA.

Sequencing of SARS-CoV-2 from wastewater is available for a select number of individual sites. The sequencing protocol is available on protocol.io. The plots below show the relative proportions of different variants inferred from sequencing the entire genome of SARS-CoV-2. Results are based on sequencing of 2 samples per week, combined to provide a weekly value.

Sequencing data is also available in aggregate across all sites in WWSCAN with sequencing data. That plot is shown below and also suggests that XFG (shown in orange) is the most abundant variant across all sites at 53.9%, followed by LF.7 (shown in yellow) is at 16%.

SARS-CoV-2 sequencing data through the week of July 26, 2025

Other Respiratory Pathogens

Influenza A & B, Respiratory Syncytial Virus, Human metapneumovirus, EV-D68 & Parvovirus

Influenza A (IAV) RNA was detected in ~13% of samples in July 2025. IAV RNA median concentration across all sites in the past 3 weeks was below the limit of detection. At a handful of sites we've seen elevated IAV concentrations at a handful of sites in the network (mainly in AK, CA and NJ).

Below is the population weighted average IAV concentrations (normalized by PMMoV) is shown in black from all participating WWSCAN sites across the country over the last 365 days.

Midwest states: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast states: CT, MA, ME, NH, NJ, NY, PA, VT. Southern states: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western States: AK, CA, CO, HI, ID, NV, UT, WA.

Nationally, Influenza A is in the 'LOW' Wastewater Category with >50% of sites now in seasonal offset of IAV in wastewater.

Below are the current Influenza A wastewater categories for all WWSCAN sites (recall the category is determined by both the trend and the level when in seasonal onset):

  • 139 are in the LOW Wastewater Category
  • 1 are in the MEDIUM Wastewater Category
  • 1 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

Influenza A Wastewater Categories. This map includes sample collection data through July 30, 2025. Each dot represents a single site and the four US Census regions are outlined in gray. Midwest Region includes: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast Region includes: CT, MA, ME, NH, NJ, NY, PA, VT. Southern Region includes: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western Region includes: AK, CA, CO, HI, ID, NV, UT, WA.

H1 Marker in Influenza A (IAV) The H1 marker in influenza A has been detected in ~2.8% of samples in July 2025. The H1 median concentration across all sites in the past 3 weeks was below the limit of detection. You can find a heat map of positive detections here.

H3 Marker in Influenza A (IAV) In July 2025, the H3 marker in influenza A was detected in ~1% of samples. You can find a heat map of positive detections here.

H5 Marker in Influenza A (IAV) As of July 30, 2025, WWSCAN sites across 28 states (AK, AR, CA, CO, CT, DE, FL, IA, ID, IL, KS, KY, MA, ME, MD, MI, MN, NC, NE, NH, NJ, NV, SD, TN, TX, UT, VA and VT) have seen positive detections for the H5 marker in influenza A. Since prospective monitoring began, 1,019/27,886 samples have tested positive (~3.6% detection rate). In July 2025, there were only 3 positive H5 marker detections. You can find a heat map of positive detections here.

Map showing the location of WWSCAN sites that have had positive detection(s) of the H5 marker in Influenza A as of July 30, 2025

Influenza B (IBV) RNA was detected in ~7.6% of samples in July 2025. IBV RNA median concentration across all sites in the past 3 weeks was below the limit of detection. Below the population-weighted average IBV RNA concentrations (normalized by PMMoV) is shown in black from all participating WWSCAN sites across the country over the last 365 days.

Midwest states: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast states: CT, MA, ME, NH, NJ, NY, PA, VT. Southern states: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western States: AK, CA, CO, HI, ID, NV, UT, WA.

Nationally, Influenza B is in the 'LOW' Wastewater Category with >50% of sites now in seasonal offset of IBV in wastewater.

Below are the current Influenza B wastewater categories for all WWSCAN sites (recall the category is determined by both the trend and the level when in seasonal onset):

  • 140 are in the LOW Wastewater Category
  • 0 are in the MEDIUM Wastewater Category
  • 1 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

IBV Wastewater Categories. This map includes sample collection data through July 30, 2025. Each dot represents a single site and the four US Census regions are outlined in gray. Midwest Region includes: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast Region includes: CT, MA, ME, NH, NJ, NY, PA, VT. Southern Region includes: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western Region includes: AK, CA, CO, HI, ID, NV, UT, WA.

Respiratory syncytial virus (RSV) RNA was detected in ~4.2% of samples in July 2025. RSV RNA median concentration across all sites in the last 3 weeks was below the limit of detection. Below the population-weighted average RSV RNA concentrations (normalized by PMMoV) is shown in black from all participating WWSCAN sites across the country over the last 365 days.

Midwest states: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast states: CT, MA, ME, NH, NJ, NY, PA, VT. Southern states: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western States: AK, CA, CO, HI, ID, NV, UT, WA.

Nationally, RSV is in the 'LOW' Wastewater Category with >50% of sites in seasonal offset of RSV in wastewater.

Below are the current RSV wastewater categories for all WWSCAN sites (recall the category is determined by both the trend and the level when in seasonal onset):

  • 141 are in the LOW Wastewater Category
  • 0 are in the MEDIUM Wastewater Category
  • 0 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

RSV Wastewater Categories. This map includes sample collection data through July 30, 2025. Each dot represents a single site and the four US Census regions are outlined in gray. Midwest Region includes: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast Region includes: CT, MA, ME, NH, NJ, NY, PA, VT. Southern Region includes: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western Region includes: AK, CA, CO, HI, ID, NV, UT, WA.

HMPV (human metapneumovirus) RNA was detected in ~25% of samples in July 2025. The median HMPV RNA concentrations across all sites in the last 3 weeks was below the limit of detection. Below is the population weighted average HMPV RNA concentrations (normalized by PMMoV) shown in black from all participating WWSCAN sites across the country over the last 365 days.

Midwest states: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast states: CT, MA, ME, NH, NJ, NY, PA, VT. Southern states: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western States: AK, CA, CO, HI, ID, NV, UT, WA.

Nationally, HMPV is in the 'LOW' Wastewater Category with >50% of sites in seasonal offset of HMPV in wastewater. ~4% of sites are still in seasonal onset for HMPV.

Below are the current HMPV wastewater categories for all WWSCAN sites (recall the category is determined by both the trend and the level):

  • 137 are in the LOW Wastewater Category
  • 3 are in the MEDIUM Wastewater Category
  • 1 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

HMPV Wastewater Categories. This map includes sample collection data through July 30, 2025. Each dot represents a single site and the four US Census regions are outlined in gray. Midwest Region includes: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast Region includes: CT, MA, ME, NH, NJ, NY, PA, VT. Southern Region includes: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western Region includes: AK, CA, CO, HI, ID, NV, UT, WA.

Enterovirus D68 (EV-D68) RNA was detected in ~6% of samples collected in July 2025. The median concentration across all sites was below the limit of detection in the last 3 weeks. Below is the population-weighted average EV-D68 RNA(normalized by PMMoV) shown in black from all participating WWSCAN sites across the country over the last 365 days.

Midwest states: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast states: CT, MA, ME, NH, NJ, NY, PA, VT. Southern states: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western States: AK, CA, CO, HI, ID, NV, UT, WA.

Nationally, EV-D68 is in the 'LOW' Wastewater Category with >50% of sites in seasonal offset of HMPV in wastewater.

Below are the current EV-D68 wastewater categories for all WWSCAN sites (recall the category is determined by both the trend and the level):

  • 141 are in the LOW Wastewater Category
  • 0 are in the MEDIUM Wastewater Category
  • 0 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

EV-D68 Wastewater Categories. This map includes sample collection data through July 30, 2025. Each dot represents a single site and the four US Census regions are outlined in gray. Midwest Region includes: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast Region includes: CT, MA, ME, NH, NJ, NY, PA, VT. Southern Region includes: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western Region includes: AK, CA, CO, HI, ID, NV, UT, WA.

Parvovirus (Parvo) DNA - In mid May 2025, we began prospectively monitoring for Parvovirus. Parvovirus B19 DNA was detected in ~26% of samples collected in July 2025 across WWSCAN sites.

The chart below shows each WWSCAN plant in Georgia as rows, and days as columns (labeled at the bottom axis). White indicates no samples, blue is a non-detect for Parvo DNA and red is a detection for Parvo DNA.

Heat map of positive Parvovirus detections (in red) across the Georgia sites participating in WWSCAN. Blue indicates non-detect.

As a reminder, we are not currently calculating wastewater categories for Parvovirus. In order to calculate wastewater categories we need a longer time series of data to examine trends and levels.

We recently published a paper on 'Community Infections Linked with Parvovirus B19 Genomic DNA in Wastewater, Texas, USA, 2023–2024'. This paper covers retrospective analysis conducted at two WWTPs in Texas prior to WWSCAN rolling out the assay to all participating WWSCAN sites. You can find the paper linked here.

Gastrointestinal Pathogens

Norovirus GII, Human Adenovirus Group F, & Rotavirus

Norovirus GII (HuNoV GII) RNA was detected in 100% of samples analyzed in July 2025. The median concentrations across all sites in July 2025 was is 2,304,602 copies per gram, down ~31% from June 2025. Below is the population weighted average HuNoV GII RNA concentrations (normalized by PMMoV) shown in black from all participating WWSCAN sites across the country over the last 365 days.

Midwest states: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast states: CT, MA, ME, NH, NJ, NY, PA, VT. Southern states: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western States: AK, CA, CO, HI, ID, NV, UT, WA.

Nationally, Norovirus is in the 'LOW' Wastewater Category with aggregated measurements showing low concentrations and no trend over the last 3 weeks.

Below are the current Norovirus wastewater categories for all WWSCAN sites (recall the category is determined by both the trend and the level):

  • 111 are in the LOW Wastewater Category
  • 24 are in the MEDIUM Wastewater Category
  • 6 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

Norovirus Wastewater Categories. This map includes sample collection data through July 30, 2025. Each dot represents a single site and the four US Census regions are outlined in gray. Midwest states: IA, IL, IN, KS, MI, MN, NE, OH, SD, WI. Northeast states: CT, MA, ME, NH, NJ, NY, PA, VT. Southern states: AL, AR, DE, FL, GA, KY, LA, MD, MS, NC, TN, TX, VA, and WV. Western States: AK, CA, CO, HI, ID, NV, UT, WA.

Human Adenovirus Group F (HAdV-F) RNA - In mid May 2025, we began prospectively monitoring for HAdV-F.

We have detected HAdV-F RNA in ~99% of samples from all WWSCAN sites in the last 3 weeks. The median concentrations across all sites in July 2025 was is 2,612,913 copies per gram, down ~37% from June 2025.

As a reminder, we are not currently calculating wastewater categories for HAdV-F. In order to calculate wastewater categories we need a longer time series of data to examine trends and levels.

Rotavirus (Rota) RNA- In mid May 2025, we started measuring Rotavirus again. We previously paused measurements of Rota in December 2024 in order to being measuring Mpox clade Ib.

We have detected Rota RNA in ~93% of samples from all WWSCAN sites in July 2025. The median concentrations across all sites in July 2025 was is 28,750 copies per gram, down ~68% from June 2025.

Below is the is the population weighted average Rota RNA concentrations (normalized by PMMoV) shown in black from all participating WWSCAN sites across the country over the last 365 days. Note measurements of Rota RNA were paused for a 6 month period (indicated by the dashed red lines in the chart).

As a reminder, we are not currently calculating wastewater categories for Rota. In order to calculate wastewater categories we need a longer time series of data to examine trends and levels.

Other Pathogens of Concern

Candida auris, Hepatitis A, Measles, Mpox clade Ib & Mpox clade II

Candida auris (C.auris) DNA - We have detected C. auris DNA in ~4% of samples from all WWSCAN sites in July 2025. Nationally, C. auris is in the 'LOW' category due to limited detections.

The chart below shows plants in the San Francisco Bay Area, CA as rows, and days as columns (labeled at the bottom axis). White indicates no samples, blue is non-detect for C. auris DNA and red is detect for C. auris DNA.

Heat map of positive C. auris detections (in red) across San Francisco Bay Area sites participating in WWSCAN. Blue indicates non-detect.

Below are the C. auris wastewater categories for all WWSCAN sites (recall the category is determined by the frequency of detection):

  • 130 are in the NOT-DETECTED Wastewater Category
  • 5 are in the LOW Wastewater Category
  • 6 are in the MEDIUM Wastewater Category
  • 0 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

Hepatitis A (Hep A) RNA - We have detected Hep A RNA in ~9.5% of samples from all WWSCAN sites in July 2025. Nationally, HepA is in 'LOW' category due to limited detections.

The chart below shows each WWSCAN plant in Florida as rows, and days as columns (labeled at the bottom axis). White indicates no samples, blue is a non-detect for Hep A RNA and red is a detection for Hep A RNA.

Heat map of positive HepA detections (in red) across Florida sites participating in WWSCAN. Blue indicates non-detect.

Below are the current HepA wastewater categories for all WWSCAN sites (the category is determined by the frequency of detection):

  • 117 are in the NOT-DETECTED Wastewater Category
  • 13 are in the LOW Wastewater Category
  • 11 are in the MEDIUM Wastewater Category
  • 0 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

Measles (MeV) RNA - In mid-May 2025, we began prospectively monitoring for MeV. In July 2025, there were 8 positive detections of MeV in wastewater samples. Nationally, MeV is in the 'LOW' category due to limited detections.

Since monitoring began, 14 sites across 11 states have had at least 1 positive detection of MeV in wastewater samples collected. Below is a map of sites with MeV detections in wastewater since prospective monitoring began.

Map only shows sites and states that are covered by the WWSCAN program. The WWSCAN program began monitoring for measles in wastewater start mid May 2025.

Below are the current MeV wastewater categories for all WWSCAN sites (the category is determined by the frequency of detection):

  • 139 are in the NOT-DETECTED Wastewater Category
  • 2 are in the LOW Wastewater Category
  • 0 are in the MEDIUM Wastewater Category
  • 0 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

Mpox clade Ib DNA - In mid December 2024 we began prospective monitoring for Mpox clade Ib. You can find a heat map of the Mpox clade Ib data here. In July 2025, there were no positive detection of Mpox clade Ib. Nationally, Mpox clade Ib is in the 'NOT-DETECTED' category due to no detections.

Below are the Mpox clade Ib wastewater categories for all WWSCAN sites (recall the category is determined by the frequency of detection):

  • 141 are in the NOT-DETECTED Wastewater Category
  • 0 are in the LOW Wastewater Category
  • 0 are in the MEDIUM Wastewater Category
  • 0 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

Mpox clade II DNA - There were 6 positive detection of Mpox clade II in July 2025. Nationally, Mpox clade Ib is in the 'LOW' category due to limited detections.

Below are the Mpox clade II wastewater categories for all WWSCAN sites (recall the category is determined by the frequency of detection):

  • 138 are in the NOT-DETECTED Wastewater Category
  • 3 are in the LOW Wastewater Category
  • 0 are in the MEDIUM Wastewater Category
  • 0 are in the HIGH Wastewater Category
  • 6 do not have enough data to calculate

WWSCAN protocols and methods

Protocols (Pre-analytical methods and SARS-CoV-2 analytical methods including controls):

Pre-prints and peer-reviewed publications provided WWSCAN methods: 

Join us at the next WWSCAN Stakeholder call on August 8, 2025

If you have questions about the website or anything else, please email: wwscan_stanford_emory@lists.stanford.edu

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